Download AreaWe developed the CoPE FBA and CoPE FBA 2.0 pipelines in Linux. The current version of our pipeline is implemented in Python. We make use of Polco and QSopt_EX.
Software Models Manuscript data
We provide three examples (toy model, iTM686.light, and Ecoli_iAF1260_noox.glc) for which we programmed shell scripts that can be used directly to enumerate and analyze the optimal solution spaces of these models.
Download output generated after enumeration of the optimal solution space (P1-P7 of the pipeline). Manuscript data analysis
Download Vertex enumeration analysis (P8-P9 of the pipeline)
Download Software Download manuscript data